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Species belonging to selected taxon:

Gossypium raimondii



ABOUT THIS RECORD

ID: MNEST041076
species: Gossypium raimondii
miRNA family: MIR157
source: miRBase, original name: gra-MIR157a (MI0005642)

Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAC

miRNA*
GCTCTTTATGCTTCTGTCATCA

mismatches: 1
bulges: 1

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pre-miRNA
GTTGTTGACAGAAGATAGAGAGCACAGATGATGGTGTGCAATTAGGAGTCTTGAAGCAATGCATCCCACTCCTTTGTGCTCTTTATGCTTCTGTCATCAC
C


dot-bracket secondary structure
..((.(((((((((((((((((((((((.(((((..((((.(((((...))))).....))))..))).)).)))))))))))))).))))))))).)).
.



SIMILARITIES
miRBase ptc-MIR156j: 9e-17

PMRD gra-miR157a: 1e-52

microPC miR157: 3e-47
UniProt no hits

RFAM no hits

Identical with: miR157 from microPC (MNEST044919)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"




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